IL_6ZU9_034

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6ZU9|1|2|A|619

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU9_034 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1316

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6ZU9|1|2|G|616
6ZU9|1|2|U|617
6ZU9|1|2|U|618
6ZU9|1|2|A|619
6ZU9|1|2|A|620
6ZU9|1|2|A|621
6ZU9|1|2|A|622
*
6ZU9|1|2|U|1104
6ZU9|1|2|C|1105

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S2

Chain c

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S26-A