IL_6ZU9_051

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU9_051 not in the Motif Atlas

Geometric match to IL_4V88_436

Geometric discrepancy: 0.186

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6ZU9|1|2|C|990
6ZU9|1|2|G|991
6ZU9|1|2|A|992
6ZU9|1|2|A|993
6ZU9|1|2|G|994
*
6ZU9|1|2|C|1010
6ZU9|1|2|G|1011
6ZU9|1|2|U|1012
6ZU9|1|2|A|1013
6ZU9|1|2|G|1014

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

40S ribosomal protein S14-A

Chain m

Eukaryotic translation initiation factor 5