IL_6ZU9_067
3D structure
- PDB id
- 6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast ABCE1-bound 48S initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 6ZU9|1|2|U|1432, 6ZU9|1|2|G|1435
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZU9_067 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1304
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6ZU9|1|2|U|1276
6ZU9|1|2|G|1277
6ZU9|1|2|G|1278
*
6ZU9|1|2|U|1430
6ZU9|1|2|C|1431
6ZU9|1|2|U|1432
6ZU9|1|2|G|1433
6ZU9|1|2|U|1434
6ZU9|1|2|G|1435
6ZU9|1|2|A|1436
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S3
- Chain D
- 40S ribosomal protein S10-A
- Chain L
- 40S ribosomal protein S20
- Chain N
- 40S ribosomal protein S29-A
Coloring options: