IL_6ZVI_020

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

6ZVI|1|h|U|313, 6ZVI|1|h|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVI_020 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.0746

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6ZVI|1|h|U|311
6ZVI|1|h|A|312
6ZVI|1|h|U|313
6ZVI|1|h|C|314
6ZVI|1|h|A|315
6ZVI|1|h|A|316
*
6ZVI|1|h|U|348
6ZVI|1|h|U|349
6ZVI|1|h|U|350
6ZVI|1|h|C|351
6ZVI|1|h|A|352
6ZVI|1|h|A|353
6ZVI|1|h|C|354
6ZVI|1|h|G|355

Current chains

Chain h

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S23-A

Chain q

40S ribosomal protein S8-A

Chain t

40S ribosomal protein S11-A