IL_6ZVI_049

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6ZVI|1|h|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVI_049 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.0708

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6ZVI|1|h|C|874
6ZVI|1|h|G|875
6ZVI|1|h|G|876
6ZVI|1|h|G|877
6ZVI|1|h|G|878
*
6ZVI|1|h|C|950
6ZVI|1|h|A|951
6ZVI|1|h|A|952
6ZVI|1|h|G|953

Current chains

Chain h

18S rRNA

Nearby chains

Chain K

RPS26B isoform 1

Chain j

RPS1A isoform 1

Chain v

40S ribosomal protein S13