IL_6ZVI_067

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

6ZVI|1|h|U|1432, 6ZVI|1|h|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVI_067 not in the Motif Atlas

Geometric match to IL_4V88_451

Geometric discrepancy: 0.103

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6ZVI|1|h|U|1276
6ZVI|1|h|G|1277
6ZVI|1|h|G|1278
*
6ZVI|1|h|U|1430
6ZVI|1|h|C|1431
6ZVI|1|h|U|1432
6ZVI|1|h|G|1433
6ZVI|1|h|U|1434
6ZVI|1|h|G|1435
6ZVI|1|h|A|1436

Current chains

Chain h

18S rRNA

Nearby chains

Chain C

RPS20 isoform 1

Chain O

RPS29A isoform 1

Chain l

RPS3 isoform 1

Chain s

40S ribosomal protein S10-A