IL_6ZXE_036

3D structure

PDB id

6ZXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6ZXE|1|2|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXE_036 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1495

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6ZXE|1|2|G|611
6ZXE|1|2|U|612
6ZXE|1|2|G|613
6ZXE|1|2|C|614
6ZXE|1|2|C|615
6ZXE|1|2|A|616
6ZXE|1|2|G|617
*
6ZXE|1|2|C|624
6ZXE|1|2|G|625
6ZXE|1|2|G|626
6ZXE|1|2|U|627
6ZXE|1|2|A|628
6ZXE|1|2|A|629
6ZXE|1|2|U|630
6ZXE|1|2|U|631
6ZXE|1|2|C|632

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30