IL_7A5F_052

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5F_052 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2829

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7A5F|1|A3|C|3119
7A5F|1|A3|C|3120
7A5F|1|A3|C|3121
7A5F|1|A3|U|3122
7A5F|1|A3|G|3123
7A5F|1|A3|U|3124
7A5F|1|A3|A|3125
7A5F|1|A3|C|3126
*
7A5F|1|A3|G|3131
7A5F|1|A3|G|3132
7A5F|1|A3|A|3133
7A5F|1|A3|C|3134
7A5F|1|A3|A|3135
7A5F|1|A3|A|3136
7A5F|1|A3|G|3137

Current chains

Chain A3

16S rRNA

Nearby chains

Chain L3

39S ribosomal protein L14, mitochondrial