IL_7A5F_103

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUAGG*CCACC

Length

10 nucleotides

Bulged bases

7A5F|1|A3|A|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5F_103 not in the Motif Atlas

Geometric match to IL_8P9A_283

Geometric discrepancy: 0.3311

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7A5F|1|A3|G|2170
7A5F|1|A3|U|2171
7A5F|1|A3|A|2172
7A5F|1|A3|G|2173
7A5F|1|A3|G|2174
*
7A5F|1|A3|C|2186
7A5F|1|A3|C|2187
7A5F|1|A3|A|2188
7A5F|1|A3|C|2189
7A5F|1|A3|C|2190

Current chains

Chain A3

16S rRNA

Nearby chains

Chain J3

39S ribosomal protein L11, mitochondrial

Chain N3

39S ribosomal protein L16, mitochondrial

Chain l3

39S ribosomal protein L54, mitochondrial