IL_7ACJ_120

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

7ACJ|1|2|U|244, 7ACJ|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ACJ_120 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1334

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

7ACJ|1|2|G|242
7ACJ|1|2|A|243
7ACJ|1|2|U|244
7ACJ|1|2|U|245
7ACJ|1|2|A|246
7ACJ|1|2|G|247
*
7ACJ|1|2|C|277
7ACJ|1|2|G|278
7ACJ|1|2|A|279
7ACJ|1|2|C|280
7ACJ|1|2|G|281
7ACJ|1|2|A|282
7ACJ|1|2|U|283
7ACJ|1|2|C|284

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17