IL_7ACJ_141

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

7ACJ|1|2|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ACJ_141 not in the Motif Atlas

Geometric match to IL_7A0S_004

Geometric discrepancy: 0.2805

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7ACJ|1|2|U|684
7ACJ|1|2|G|685
7ACJ|1|2|U|686
7ACJ|1|2|A|687
7ACJ|1|2|G|688
*
7ACJ|1|2|C|699
7ACJ|1|2|G|700
7ACJ|1|2|U|701
7ACJ|1|2|A|702
7ACJ|1|2|G|703
7ACJ|1|2|A|704
7ACJ|1|2|G|705
7ACJ|1|2|A|706

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

30S ribosomal protein S11