IL_7AJT_011

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UCGU*AUUGG

Length

9 nucleotides

Bulged bases

7AJT|1|D2|U|267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_011 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2723

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7AJT|1|D2|U|244
7AJT|1|D2|C|245
7AJT|1|D2|G|246
7AJT|1|D2|U|247
*
7AJT|1|D2|A|265
7AJT|1|D2|U|266
7AJT|1|D2|U|267
7AJT|1|D2|G|268
7AJT|1|D2|G|269

Current chains

Chain D2

5'ETS RNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DQ

40S ribosomal protein S16-A

Chain UK

U3 small nucleolar RNA-associated protein 11