IL_7AJT_044
3D structure
- PDB id
- 7AJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CCAAUC*GGAG
- Length
- 10 nucleotides
- Bulged bases
- 7AJT|1|D3|G|459
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AJT_044 not in the Motif Atlas
- Homologous match to IL_4V88_408
- Geometric discrepancy: 0.1772
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
7AJT|1|D3|C|443
7AJT|1|D3|C|444
7AJT|1|D3|A|445
7AJT|1|D3|A|446
7AJT|1|D3|U|447
7AJT|1|D3|C|448
*
7AJT|1|D3|G|458
7AJT|1|D3|G|459
7AJT|1|D3|A|460
7AJT|1|D3|G|461
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DE
- 40S ribosomal protein S4-A
- Chain DJ
- 40S ribosomal protein S9-A
- Chain DY
- 40S ribosomal protein S24-A
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