IL_7AJT_057

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

7AJT|1|D3|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_057 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.2397

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7AJT|1|D3|C|874
7AJT|1|D3|G|875
7AJT|1|D3|G|876
7AJT|1|D3|G|877
7AJT|1|D3|G|878
*
7AJT|1|D3|C|950
7AJT|1|D3|A|951
7AJT|1|D3|A|952
7AJT|1|D3|G|953

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DA

40S ribosomal protein S1-A

Chain DN

40S ribosomal protein S13

Chain JO

KRR1 small subunit processome component