3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGAAG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AJU_051 not in the Motif Atlas
Homologous match to IL_4V88_436
Geometric discrepancy: 0.1751
The information below is about IL_4V88_436
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.4
Basepair signature
cWW-R-L-tHS-tHW-cWW
Number of instances in this motif group
18

Unit IDs

7AJU|1|D3|C|990
7AJU|1|D3|G|991
7AJU|1|D3|A|992
7AJU|1|D3|A|993
7AJU|1|D3|G|994
*
7AJU|1|D3|C|1010
7AJU|1|D3|G|1011
7AJU|1|D3|U|1012
7AJU|1|D3|A|1013
7AJU|1|D3|G|1014

Current chains

Chain D3
18S rRNA

Nearby chains

Chain DO
40S ribosomal protein S14-A
Chain JL
Dimethyladenosine transferase

Coloring options:


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