IL_7AQD_047

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7AQD|1|A|U|1251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_047 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1159

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

7AQD|1|A|C|1248
7AQD|1|A|U|1249
7AQD|1|A|G|1250
7AQD|1|A|U|1251
7AQD|1|A|G|1252
7AQD|1|A|A|1253
7AQD|1|A|A|1254
7AQD|1|A|G|1255
*
7AQD|1|A|U|1274
7AQD|1|A|G|1275
7AQD|1|A|G|1276
7AQD|1|A|A|1277
7AQD|1|A|G|1278

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20