IL_7ASN_007

3D structure

PDB id

7ASN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation a 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASN_007 not in the Motif Atlas

Homologous match to IL_4WF9_008

Geometric discrepancy: 0.0832

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93502.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ASN|1|A|G|190
7ASN|1|A|A|191
7ASN|1|A|G|192
7ASN|1|A|A|193
7ASN|1|A|A|194
7ASN|1|A|C|195
7ASN|1|A|U|196
7ASN|1|A|G|197
*
7ASN|1|A|C|204
7ASN|1|A|U|205
7ASN|1|A|U|206
7ASN|1|A|A|207
7ASN|1|A|G|208
7ASN|1|A|U|209
7ASN|1|A|A|210
7ASN|1|A|C|211
7ASN|1|A|C|212

Current chains

Chain A

23S

Nearby chains

Chain 2

50S ribosomal protein L34

Chain L

50S ribosomal protein L15

Chain V

50S ribosomal protein L28