IL_7AZO_194
3D structure
- PDB id
- 7AZO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 7AZO|1|23SA|A|1963, 7AZO|1|23SA|U|1969, 7AZO|1|23SA|U|1988
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AZO_194 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1277
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
7AZO|1|23SA|C|1959
7AZO|1|23SA|G|1960
7AZO|1|23SA|A|1961
7AZO|1|23SA|A|1962
7AZO|1|23SA|A|1963
7AZO|1|23SA|5MU|1964
7AZO|1|23SA|U|1965
7AZO|1|23SA|C|1966
7AZO|1|23SA|5MC|1967
7AZO|1|23SA|U|1968
7AZO|1|23SA|U|1969
7AZO|1|23SA|G|1970
*
7AZO|1|23SA|C|1986
7AZO|1|23SA|5MC|1987
7AZO|1|23SA|U|1988
7AZO|1|23SA|G|1989
Current chains
- Chain 23SA
- 23S rRNA
Nearby chains
- Chain 16SA
- Small subunit ribosomal RNA; SSU rRNA
- Chain ASIA
- Transfer RNA; tRNA
- Chain L2A
- 50S ribosomal protein L2
Coloring options: