IL_7BHP_036

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7BHP|1|L5|G|748, 7BHP|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_036 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1923

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7BHP|1|L5|G|745
7BHP|1|L5|A|746
7BHP|1|L5|A|747
7BHP|1|L5|G|748
7BHP|1|L5|G|749
7BHP|1|L5|U|750
7BHP|1|L5|G|751
7BHP|1|L5|G|752
*
7BHP|1|L5|U|911
7BHP|1|L5|G|912
7BHP|1|L5|U|913
7BHP|1|L5|U|914
7BHP|1|L5|A|915
7BHP|1|L5|C|916
7BHP|1|L5|A|917
7BHP|1|L5|G|918
7BHP|1|L5|C|919

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a