IL_7BHP_085

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_085 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1015

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7BHP|1|L5|G|2358
7BHP|1|L5|U|2359
7BHP|1|L5|A|2360
7BHP|1|L5|G|2361
7BHP|1|L5|U|2362
7BHP|1|L5|A|2363
7BHP|1|L5|G|2364
*
7BHP|1|L5|C|3858
7BHP|1|L5|G|3859
7BHP|1|L5|A|3860
7BHP|1|L5|A|3861
7BHP|1|L5|A|3862
7BHP|1|L5|C|3863

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17