IL_7BHP_138

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_138 not in the Motif Atlas

Homologous match to IL_8C3A_125

Geometric discrepancy: 0.1128

The information below is about IL_8C3A_125

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7BHP|1|L5|C|4596
7BHP|1|L5|U|4597
7BHP|1|L5|C|4598
7BHP|1|L5|A|4599
7BHP|1|L5|G|4600
7BHP|1|L5|U|4601
7BHP|1|L5|A|4602
7BHP|1|L5|C|4603
*
7BHP|1|L5|G|4608
7BHP|1|L5|G|4609
7BHP|1|L5|A|4610
7BHP|1|L5|A|4611
7BHP|1|L5|C|4612
7BHP|1|L5|C|4613
7BHP|1|L5|G|4614

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40