IL_7BHP_169

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAC*GGUCG

Length

9 nucleotides

Bulged bases

7BHP|1|L5|C|1202

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_169 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.3009

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7BHP|1|L5|C|1093
7BHP|1|L5|G|1094
7BHP|1|L5|A|1095
7BHP|1|L5|C|1096
*
7BHP|1|L5|G|1199
7BHP|1|L5|G|1200
7BHP|1|L5|U|1201
7BHP|1|L5|C|1202
7BHP|1|L5|G|1203

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21