IL_7BT6_061

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

7BT6|1|1|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BT6_061 not in the Motif Atlas

Homologous match to IL_8C3A_072

Geometric discrepancy: 0.3996

The information below is about IL_8C3A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7BT6|1|1|U|1627
7BT6|1|1|C|1628
7BT6|1|1|U|1629
7BT6|1|1|U|1630
7BT6|1|1|C|1631
*
7BT6|1|1|G|1811
7BT6|1|1|G|1812
7BT6|1|1|A|1813
7BT6|1|1|A|1814
7BT6|1|1|U|1815
7BT6|1|1|A|1816

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain Z

60S ribosomal protein L27-A