IL_7BT6_098
3D structure
- PDB id
- 7BT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7BT6_098 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1457
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7BT6|1|1|C|3018
7BT6|1|1|U|3019
7BT6|1|1|U|3020
7BT6|1|1|A|3021
7BT6|1|1|G|3022
7BT6|1|1|U|3023
7BT6|1|1|A|3024
7BT6|1|1|C|3025
*
7BT6|1|1|G|3030
7BT6|1|1|G|3031
7BT6|1|1|A|3032
7BT6|1|1|A|3033
7BT6|1|1|C|3034
7BT6|1|1|A|3035
7BT6|1|1|G|3036
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L9-A
- Chain V
- 60S ribosomal protein L23-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain r
- Ribosome biogenesis protein NSA2
- Chain y
- Eukaryotic translation initiation factor 6
- Chain z
- UPF0642 protein YBL028C
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