IL_7CPU_032

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7CPU|1|L5|G|756, 7CPU|1|L5|C|816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_032 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1616

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7CPU|1|L5|G|753
7CPU|1|L5|A|754
7CPU|1|L5|A|755
7CPU|1|L5|G|756
7CPU|1|L5|G|757
7CPU|1|L5|U|758
7CPU|1|L5|G|759
7CPU|1|L5|G|760
*
7CPU|1|L5|U|811
7CPU|1|L5|G|812
7CPU|1|L5|U|813
7CPU|1|L5|U|814
7CPU|1|L5|A|815
7CPU|1|L5|C|816
7CPU|1|L5|A|817
7CPU|1|L5|G|818
7CPU|1|L5|C|819

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a