IL_7CPU_079

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_079 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0911

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7CPU|1|L5|G|2115
7CPU|1|L5|U|2116
7CPU|1|L5|A|2117
7CPU|1|L5|G|2118
7CPU|1|L5|U|2119
7CPU|1|L5|A|2120
7CPU|1|L5|G|2121
*
7CPU|1|L5|C|3515
7CPU|1|L5|G|3516
7CPU|1|L5|A|3517
7CPU|1|L5|A|3518
7CPU|1|L5|A|3519
7CPU|1|L5|C|3520

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17