IL_7CPU_234
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 7CPU|1|S2|A|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPU_234 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.2004
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7CPU|1|S2|G|1551
7CPU|1|S2|U|1552
7CPU|1|S2|G|1553
7CPU|1|S2|C|1554
7CPU|1|S2|C|1555
7CPU|1|S2|U|1556
7CPU|1|S2|A|1557
7CPU|1|S2|C|1558
7CPU|1|S2|C|1559
*
7CPU|1|S2|G|1578
7CPU|1|S2|U|1579
7CPU|1|S2|A|1580
7CPU|1|S2|A|1581
7CPU|1|S2|C|1582
7CPU|1|S2|C|1583
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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