IL_7D5S_050

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D5S_050 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.23

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7D5S|1|SA|C|990
7D5S|1|SA|G|991
7D5S|1|SA|A|992
7D5S|1|SA|A|993
7D5S|1|SA|G|994
*
7D5S|1|SA|C|1010
7D5S|1|SA|G|1011
7D5S|1|SA|U|1012
7D5S|1|SA|A|1013
7D5S|1|SA|G|1014

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RD

rRNA biogenesis protein RRP5