IL_7D63_027

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

7D63|1|SA|U|313, 7D63|1|SA|C|351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D63_027 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.238

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7D63|1|SA|U|311
7D63|1|SA|A|312
7D63|1|SA|U|313
7D63|1|SA|C|314
7D63|1|SA|A|315
7D63|1|SA|A|316
*
7D63|1|SA|U|348
7D63|1|SA|U|349
7D63|1|SA|U|350
7D63|1|SA|C|351
7D63|1|SA|A|352
7D63|1|SA|A|353
7D63|1|SA|C|354
7D63|1|SA|G|355

Current chains

Chain SA

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A