IL_7D63_044
3D structure
- PDB id
- 7D63 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.3 Å
Loop
- Sequence
- GGUC*GGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D63_044 not in the Motif Atlas
- Geometric match to IL_4V88_430
- Geometric discrepancy: 0.1353
- The information below is about IL_4V88_430
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7D63|1|SA|G|871
7D63|1|SA|G|872
7D63|1|SA|U|873
7D63|1|SA|C|874
*
7D63|1|SA|G|953
7D63|1|SA|G|954
7D63|1|SA|A|955
7D63|1|SA|C|956
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain RF
- Ribosomal RNA-processing protein 7
- Chain SC
- 40S ribosomal protein S1-A
- Chain SO
- 40S ribosomal protein S13
- Chain Sc
- 40S ribosomal protein S27-A
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