IL_7D80_086

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7D80|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_086 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1499

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7D80|1|A|C|2636
7D80|1|A|U|2637
7D80|1|A|G|2638
7D80|1|A|A|2639
7D80|1|A|G|2640
*
7D80|1|A|C|2774
7D80|1|A|G|2775
7D80|1|A|A|2776
7D80|1|A|G|2777
7D80|1|A|A|2778
7D80|1|A|U|2779
7D80|1|A|G|2780
7D80|1|A|A|2781
7D80|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain i

50S ribosomal protein L13