IL_7D80_169
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGAUGUG*UGCGCG
- Length
- 13 nucleotides
- Bulged bases
- 7D80|1|A|U|1033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D80_169 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3876
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
7D80|1|A|C|1030
7D80|1|A|G|1031
7D80|1|A|A|1032
7D80|1|A|U|1033
7D80|1|A|G|1034
7D80|1|A|U|1035
7D80|1|A|G|1036
*
7D80|1|A|U|1119
7D80|1|A|G|1120
7D80|1|A|C|1121
7D80|1|A|G|1122
7D80|1|A|C|1123
7D80|1|A|G|1124
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L36
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain f
- 50S ribosomal protein L6
- Chain l
- 50S ribosomal protein L16
- Chain t
- 50S ribosomal protein L25
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