IL_7D80_181

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGCC*GGUAAA

Length

10 nucleotides

Bulged bases

7D80|1|A|A|1899, 7D80|1|A|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_181 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3222

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

7D80|1|A|U|1841
7D80|1|A|G|1842
7D80|1|A|C|1843
7D80|1|A|C|1844
*
7D80|1|A|G|1896
7D80|1|A|G|1897
7D80|1|A|U|1898
7D80|1|A|A|1899
7D80|1|A|A|1900
7D80|1|A|A|1901

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2