IL_7F0D_005

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

7F0D|1|A|G|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_005 not in the Motif Atlas

Geometric match to IL_7A0S_004

Geometric discrepancy: 0.2057

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7F0D|1|A|G|81
7F0D|1|A|G|82
7F0D|1|A|G|83
7F0D|1|A|A|84
7F0D|1|A|G|85
*
7F0D|1|A|C|98
7F0D|1|A|G|99
7F0D|1|A|U|100
7F0D|1|A|G|101
7F0D|1|A|G|102
7F0D|1|A|A|103
7F0D|1|A|U|104
7F0D|1|A|C|105

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24

Chain Y

50S ribosomal protein L29