IL_7F0D_049

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7F0D|1|A|C|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_049 not in the Motif Atlas

Geometric match to IL_3U4M_004

Geometric discrepancy: 0.1564

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

7F0D|1|A|C|1339
7F0D|1|A|A|1340
7F0D|1|A|G|1341
7F0D|1|A|C|1342
7F0D|1|A|G|1343
7F0D|1|A|A|1344
7F0D|1|A|A|1345
7F0D|1|A|G|1346
*
7F0D|1|A|U|1365
7F0D|1|A|G|1366
7F0D|1|A|G|1367
7F0D|1|A|A|1368
7F0D|1|A|G|1369

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20