IL_7JQB_010

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

7JQB|1|A|G|113, 7JQB|1|A|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_010 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1384

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7JQB|1|A|U|112
7JQB|1|A|G|113
7JQB|1|A|G|114
7JQB|1|A|U|115
*
7JQB|1|A|A|348
7JQB|1|A|A|349

Current chains

Chain A

rRNA

Nearby chains

Chain J

eS8

Chain M

40S ribosomal protein S4

Chain O

uS17