IL_7JQB_016

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

7JQB|1|A|U|305, 7JQB|1|A|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_016 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3858

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

7JQB|1|A|C|216
7JQB|1|A|A|217
7JQB|1|A|U|218
7JQB|1|A|U|219
*
7JQB|1|A|A|302
7JQB|1|A|C|303
7JQB|1|A|C|304
7JQB|1|A|U|305
7JQB|1|A|C|306
7JQB|1|A|G|307
7JQB|1|A|G|308
7JQB|1|A|G|309

Current chains

Chain A

rRNA

Nearby chains

Chain J

eS8

Chain M

40S ribosomal protein S4