IL_7JQB_033
3D structure
- PDB id
- 7JQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7JQB|1|A|A|628
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JQB_033 not in the Motif Atlas
- Homologous match to IL_8C3A_425
- Geometric discrepancy: 0.1697
- The information below is about IL_8C3A_425
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7JQB|1|A|G|611
7JQB|1|A|U|612
7JQB|1|A|G|613
7JQB|1|A|C|614
7JQB|1|A|C|615
7JQB|1|A|A|616
7JQB|1|A|G|617
*
7JQB|1|A|C|624
7JQB|1|A|G|625
7JQB|1|A|G|626
7JQB|1|A|U|627
7JQB|1|A|A|628
7JQB|1|A|A|629
7JQB|1|A|U|630
7JQB|1|A|U|631
7JQB|1|A|C|632
Current chains
- Chain A
- rRNA
Nearby chains
- Chain E
- Ribosomal protein S3
- Chain F
- Nsp1
- Chain c
- Uncharacterized protein
- Chain f
- eS30
Coloring options: