IL_7JQB_052

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_052 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.0915

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7JQB|1|A|C|1047
7JQB|1|A|G|1048
7JQB|1|A|A|1049
7JQB|1|A|A|1050
7JQB|1|A|G|1051
*
7JQB|1|A|C|1067
7JQB|1|A|G|1068
7JQB|1|A|U|1069
7JQB|1|A|A|1070
7JQB|1|A|G|1071

Current chains

Chain A

rRNA

Nearby chains

Chain X

Uncharacterized protein

Chain b

40S ribosomal protein S26