IL_7JQB_069
3D structure
- PDB id
- 7JQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 7JQB|1|A|U|1494, 7JQB|1|A|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JQB_069 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1306
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7JQB|1|A|U|1333
7JQB|1|A|G|1334
7JQB|1|A|G|1335
*
7JQB|1|A|U|1492
7JQB|1|A|C|1493
7JQB|1|A|U|1494
7JQB|1|A|G|1495
7JQB|1|A|U|1496
7JQB|1|A|G|1497
7JQB|1|A|A|1498
Current chains
- Chain A
- rRNA
Nearby chains
- Chain E
- Ribosomal protein S3
- Chain L
- S10_plectin domain-containing protein
- Chain V
- uS10
Coloring options: