IL_7JQB_077

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

7JQB|1|A|A|1580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_077 not in the Motif Atlas

Geometric match to IL_5J7L_055

Geometric discrepancy: 0.2413

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7JQB|1|A|G|1550
7JQB|1|A|U|1551
7JQB|1|A|G|1552
7JQB|1|A|C|1553
7JQB|1|A|C|1554
7JQB|1|A|U|1555
7JQB|1|A|A|1556
7JQB|1|A|C|1557
7JQB|1|A|C|1558
*
7JQB|1|A|G|1577
7JQB|1|A|U|1578
7JQB|1|A|A|1579
7JQB|1|A|A|1580
7JQB|1|A|C|1581
7JQB|1|A|C|1582

Current chains

Chain A

rRNA

Nearby chains

Chain E

Ribosomal protein S3

Chain L

S10_plectin domain-containing protein

Chain V

uS10