IL_7JSW_036

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSW_036 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.173

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7JSW|1|1|U|1018
7JSW|1|1|U|1019
7JSW|1|1|A|1020
7JSW|1|1|A|1021
7JSW|1|1|G|1022
7JSW|1|1|U|1023
7JSW|1|1|G|1024
*
7JSW|1|1|C|1140
7JSW|1|1|U|1141
7JSW|1|1|A|1142
7JSW|1|1|A|1143
7JSW|1|1|A|1144

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain j

50S ribosomal protein L13