IL_7JSW_068

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7JSW|1|1|A|1801, 7JSW|1|1|C|1816, 7JSW|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSW_068 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1287

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7JSW|1|1|U|1798
7JSW|1|1|G|1799
7JSW|1|1|C|1800
7JSW|1|1|A|1801
7JSW|1|1|A|1802
7JSW|1|1|A|1803
7JSW|1|1|C|1804
*
7JSW|1|1|G|1813
7JSW|1|1|G|1814
7JSW|1|1|A|1815
7JSW|1|1|C|1816
7JSW|1|1|G|1817
7JSW|1|1|U|1818
7JSW|1|1|A|1819
7JSW|1|1|U|1820
7JSW|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2