IL_7JT3_097

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7JT3|1|1|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT3_097 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1252

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7JT3|1|1|C|2636
7JT3|1|1|U|2637
7JT3|1|1|G|2638
7JT3|1|1|A|2639
7JT3|1|1|G|2640
*
7JT3|1|1|C|2774
7JT3|1|1|G|2775
7JT3|1|1|A|2776
7JT3|1|1|G|2777
7JT3|1|1|A|2778
7JT3|1|1|U|2779
7JT3|1|1|G|2780
7JT3|1|1|A|2781
7JT3|1|1|G|2782

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain j

50S ribosomal protein L13