IL_7JT3_141

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

7JT3|1|3|U|632

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT3_141 not in the Motif Atlas

Homologous match to IL_5J7L_030

Geometric discrepancy: 0.2262

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7JT3|1|3|U|605
7JT3|1|3|G|606
7JT3|1|3|A|607
7JT3|1|3|A|608
7JT3|1|3|A|609
7JT3|1|3|U|610
7JT3|1|3|C|611
7JT3|1|3|C|612
*
7JT3|1|3|G|628
7JT3|1|3|A|629
7JT3|1|3|A|630
7JT3|1|3|C|631
7JT3|1|3|U|632
7JT3|1|3|G|633

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S4

Chain M

30S ribosomal protein S8

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17