IL_7LS2_076

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUG*C(A2M)GA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_076 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2722

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7LS2|1|A2|U|1663
7LS2|1|A2|U|1664
7LS2|1|A2|U|1665
7LS2|1|A2|G|1666
*
7LS2|1|A2|C|1672
7LS2|1|A2|A2M|1673
7LS2|1|A2|G|1674
7LS2|1|A2|A|1675

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain D1

60S ribosomal protein L10-like

Chain V2

60S ribosomal protein L29