IL_7LS2_084

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

7LS2|1|A2|A|1762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_084 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2381

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7LS2|1|A2|U|1759
7LS2|1|A2|A|1760
7LS2|1|A2|U|1761
7LS2|1|A2|A|1762
7LS2|1|A2|G|1763
7LS2|1|A2|A|1764
7LS2|1|A2|C|1765
7LS2|1|A2|A|1766
7LS2|1|A2|G|1767
*
7LS2|1|A2|C|1824
7LS2|1|A2|C|1825
7LS2|1|A2|G|1826
7LS2|1|A2|A|1827
7LS2|1|A2|A|1828

Current chains

Chain A2

28S rRNA

Nearby chains

Chain g2

Ubiquitin-60S ribosomal protein L40

Chain j

60S acidic ribosomal protein P0