IL_7LS2_108

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_108 not in the Motif Atlas

Homologous match to IL_5TBW_074

Geometric discrepancy: 0.2315

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7LS2|1|A2|A|2587
7LS2|1|A2|A|2588
7LS2|1|A2|C|2589
7LS2|1|A2|A|2590
7LS2|1|A2|A|2591
7LS2|1|A2|U|2592
7LS2|1|A2|G|2593
*
7LS2|1|A2|C|3506
7LS2|1|A2|U|3507
7LS2|1|A2|A|3508
7LS2|1|A2|U|3509

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain J2

60S ribosomal protein L17

Chain X2

60S ribosomal protein L31