IL_7LS2_118

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7LS2|1|A2|A|3319, 7LS2|1|A2|U|3335, 7LS2|1|A2|C|3339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_118 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0854

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7LS2|1|A2|C|3316
7LS2|1|A2|G|3317
7LS2|1|A2|A|3318
7LS2|1|A2|A|3319
7LS2|1|A2|G|3320
7LS2|1|A2|G|3321
*
7LS2|1|A2|U|3333
7LS2|1|A2|G|3334
7LS2|1|A2|U|3335
7LS2|1|A2|U|3336
7LS2|1|A2|G|3337
7LS2|1|A2|A|3338
7LS2|1|A2|C|3339
7LS2|1|A2|G|3340

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain j2

60S ribosomal protein L37a

Chain m2

Small subunit ribosomal RNA; SSU rRNA