IL_7LS2_160

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUA(PSU)(OMG)U*GCGAAG

Length

13 nucleotides

Bulged bases

7LS2|1|A2|U|4286

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_160 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.3322

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.3

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

7LS2|1|A2|U|4284
7LS2|1|A2|G|4285
7LS2|1|A2|U|4286
7LS2|1|A2|A|4287
7LS2|1|A2|PSU|4288
7LS2|1|A2|OMG|4289
7LS2|1|A2|U|4290
*
7LS2|1|A2|G|4313
7LS2|1|A2|C|4314
7LS2|1|A2|G|4315
7LS2|1|A2|A|4316
7LS2|1|A2|A|4317
7LS2|1|A2|G|4318

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain Q2

60S ribosomal protein L24

Chain X2

60S ribosomal protein L31